<domain name="biofilm">
  <claims>
    <claim id="recirculating" text="recirculating pipes"/>
    <claim id="downstream" text="downstream pipes"/>
  </claims>
  <decisions>
    <decision id="Positive"/>
    <decision id="Negative"/>
    <decision id="Unknown"/>
  </decisions>
  <tests>
    <test id="culturing" label="Culturing" cost="0.0" delay="0" isInt="true" description="cultureIsolation.html">
      <keywords>
        <keyword value="culturing"/>
        <keyword value="isolate bacteria"/>
        <keyword value="gram stain"/>
        <keyword value="grow bacteria"/>
        <keyword value="enumerate bacteria"/>
        <keyword value="sample bacteria"/>
        <keyword value="analyze bacteria"/>
        <keyword value="culture bacteria"/>
        <keyword value="microbiology"/>
        <keyword value="bacteria growth"/>
        <keyword value="bacteria"/>
        <keyword value="viable"/>
      </keywords>
      <parameters>
        <parameter parameter-id="location" label="Location of Sample" cost="0.0" delay="0" fixedCost="0.0" selection="multiple" mainCost="0.0" exclusive="true" initialCostPerUnit="0.0">
          <parameterValueList list-id="list1" label="list 1">
            <parameterValue value-id="checkpoint1" default="false" cost="0.0" delay="0" lateDelay="0" lateDate="0">
<display>check point 1</display>            </parameterValue>
            <parameterValue value-id="checkpoint2" default="false" cost="0.0" delay="0" lateDelay="0" lateDate="0">
<display>check point 2</display>            </parameterValue>
            <parameterValue value-id="checkpoint3" default="false" cost="0.0" delay="0" lateDelay="0" lateDate="0">
<display>check point 3</display>            </parameterValue>
            <parameterValue value-id="checkpoint4" default="false" cost="0.0" delay="0" lateDelay="0" lateDate="0">
<display>check point 4</display>            </parameterValue>
            <parameterValue value-id="checkpoint5" default="false" cost="0.0" delay="0" lateDelay="0" lateDate="0">
<display>check point 5</display>            </parameterValue>
            <parameterValue value-id="checkpoint6" default="false" cost="0.0" delay="0" lateDelay="0" lateDate="0">
<display>check point 6</display>            </parameterValue>
            <parameterValue value-id="checkpoint7" default="false" cost="0.0" delay="0" lateDelay="0" lateDate="0">
<display>check point 7</display>            </parameterValue>
            <parameterValue value-id="checkpoint8" default="false" cost="0.0" delay="0" lateDelay="0" lateDate="0">
<display>check point 8</display>            </parameterValue>
            <parameterValue value-id="checkpoint9" default="false" cost="0.0" delay="0" lateDelay="0" lateDate="0">
<display>check point 9</display>            </parameterValue>
            <parameterValue value-id="checkpoint10" default="false" cost="0.0" delay="0" lateDelay="0" lateDate="0">
<display>check point 10</display>            </parameterValue>
            <parameterValue value-id="checkpoint11" default="false" cost="0.0" delay="0" lateDelay="0" lateDate="0">
<display>check point 11</display>            </parameterValue>
            <parameterValue value-id="checkpoint12" default="false" cost="0.0" delay="0" lateDelay="0" lateDate="0">
<display>check point 12</display>            </parameterValue>
          </parameterValueList>
        </parameter>
        <parameter parameter-id="temperature" label="Temperature" cost="0.0" delay="0" fixedCost="0.0" selection="multiple" mainCost="0.0" exclusive="true" initialCostPerUnit="0.0">
          <parameterValueList list-id="list1" label="list 1">
            <parameterValue value-id="25C" default="false" cost="0.0" delay="0" lateDelay="0" lateDate="0">
<display>25C</display>            </parameterValue>
            <parameterValue value-id="30C" default="false" cost="0.0" delay="0" lateDelay="0" lateDate="0">
<display>30C</display>            </parameterValue>
            <parameterValue value-id="37C" default="false" cost="0.0" delay="0" lateDelay="0" lateDate="0">
<display>37C</display>            </parameterValue>
          </parameterValueList>
        </parameter>
        <parameter parameter-id="media" label="Growth Medium" cost="0.0" delay="0" fixedCost="0.0" selection="multiple" mainCost="0.0" exclusive="true" initialCostPerUnit="0.0">
          <parameterValueList list-id="aerobic" label="aerobic">
            <parameterValue value-id="nutrient" default="false" cost="0.0" delay="0" lateDelay="0" lateDate="0">
<display>nutrient</display>            </parameterValue>
            <parameterValue value-id="R2A" default="false" cost="0.0" delay="0" lateDelay="0" lateDate="0">
<display>R2A</display>            </parameterValue>
            <parameterValue value-id="NH4/NO2" default="false" cost="0.0" delay="0" lateDelay="0" lateDate="0">
<display>NH4/NO2 oxidizers</display>            </parameterValue>
            <parameterValue value-id="H2S,So" default="false" cost="0.0" delay="0" lateDelay="0" lateDate="0">
<display>H2S,So oxidizers</display>            </parameterValue>
            <parameterValue value-id="FeAcidic" default="false" cost="0.0" delay="0" lateDelay="0" lateDate="0">
<display>Fe oxidizers(acidic pH)</display>            </parameterValue>
            <parameterValue value-id="FeNeutral" default="false" cost="0.0" delay="0" lateDelay="0" lateDate="0">
<display>Fe oxidizers(neutral pH)</display>            </parameterValue>
            <parameterValue value-id="MnOxidizers" default="false" cost="0.0" delay="0" lateDelay="0" lateDate="0">
<display>Mn oxidizers</display>            </parameterValue>
          </parameterValueList>
          <parameterValueList list-id="anaerobic" label="anaerobic">
            <parameterValue value-id="Methanogens" default="false" cost="0.0" delay="0" lateDelay="0" lateDate="0">
<display>Methanogenic enrichment</display>            </parameterValue>
            <parameterValue value-id="SRB" default="false" cost="0.0" delay="0" lateDelay="0" lateDate="0">
<display>SRB</display>            </parameterValue>
            <parameterValue value-id="R2A+nitrate" default="false" cost="0.0" delay="0" lateDelay="0" lateDate="0">
<display>R2A+nitrate</display>            </parameterValue>
            <parameterValue value-id="nutrient+nitrate" default="false" cost="0.0" delay="0" lateDelay="0" lateDate="0">
<display>nutrient+nitrate</display>            </parameterValue>
            <parameterValue value-id="richSugar" default="false" cost="0.0" delay="0" lateDelay="0" lateDate="0">
<display>rich sugar</display>            </parameterValue>
          </parameterValueList>
        </parameter>
        <parameter parameter-id="dataSet" label="Morphological Analysis" cost="0.0" delay="0" fixedCost="0.0" selection="multiple" mainCost="0.0" exclusive="false" initialCostPerUnit="0.0">
          <parameterValueList list-id="list1" label="list 1">
            <parameterValue value-id="totalNumber" default="true" cost="1000.0" delay="7" lateDelay="0" lateDate="0">
<display>total #'s</display>            </parameterValue>
            <parameterValue value-id="colony" default="false" cost="2000.0" delay="7" lateDelay="0" lateDate="0">
<display>colony morphotypes</display>            </parameterValue>
            <parameterValue value-id="gramStain" default="false" cost="10000.0" delay="14" lateDelay="0" lateDate="0">
<display>gram stain</display>            </parameterValue>
          </parameterValueList>
        </parameter>
      </parameters>
    </test>
    <test id="dgge" label="DGGE" cost="0.0" delay="0" isInt="true" description="dgge.html">
      <keywords>
        <keyword value="phylogenetic analysis"/>
        <keyword value="phylogeny"/>
        <keyword value="community structure"/>
        <keyword value="community analysis"/>
        <keyword value="species composition"/>
        <keyword value="T-RFLP"/>
        <keyword value="16s rRNA"/>
        <keyword value="16sRNA"/>
        <keyword value="probe"/>
        <keyword value="DGGE"/>
      </keywords>
      <parameters>
        <parameter parameter-id="location" label="Location of Sample" cost="0.0" delay="0" fixedCost="0.0" selection="multiple" mainCost="0.0" exclusive="true" initialCostPerUnit="0.0">
          <parameterValueList list-id="list1" label="list 1">
            <parameterValue value-id="checkpoint1" default="false" cost="0.0" delay="0" lateDelay="0" lateDate="0">
<display>check point 1</display>            </parameterValue>
            <parameterValue value-id="checkpoint2" default="false" cost="0.0" delay="0" lateDelay="0" lateDate="0">
<display>check point 2</display>            </parameterValue>
            <parameterValue value-id="checkpoint3" default="false" cost="0.0" delay="0" lateDelay="0" lateDate="0">
<display>check point 3</display>            </parameterValue>
            <parameterValue value-id="checkpoint4" default="false" cost="0.0" delay="0" lateDelay="0" lateDate="0">
<display>check point 4</display>            </parameterValue>
            <parameterValue value-id="checkpoint5" default="false" cost="0.0" delay="0" lateDelay="0" lateDate="0">
<display>check point 5</display>            </parameterValue>
            <parameterValue value-id="checkpoint6" default="false" cost="0.0" delay="0" lateDelay="0" lateDate="0">
<display>check point 6</display>            </parameterValue>
            <parameterValue value-id="checkpoint7" default="false" cost="0.0" delay="0" lateDelay="0" lateDate="0">
<display>check point 7</display>            </parameterValue>
            <parameterValue value-id="checkpoint8" default="false" cost="0.0" delay="0" lateDelay="0" lateDate="0">
<display>check point 8</display>            </parameterValue>
            <parameterValue value-id="checkpoint9" default="false" cost="0.0" delay="0" lateDelay="0" lateDate="0">
<display>check point 9</display>            </parameterValue>
            <parameterValue value-id="checkpoint10" default="false" cost="0.0" delay="0" lateDelay="0" lateDate="0">
<display>check point 10</display>            </parameterValue>
            <parameterValue value-id="checkpoint11" default="false" cost="0.0" delay="0" lateDelay="0" lateDate="0">
<display>check point 11</display>            </parameterValue>
            <parameterValue value-id="checkpoint12" default="false" cost="0.0" delay="0" lateDelay="0" lateDate="0">
<display>check point 12</display>            </parameterValue>
          </parameterValueList>
        </parameter>
        <parameter parameter-id="primerSet" label="Primer Set" cost="5000.0" delay="0" fixedCost="0.0" selection="multiple" mainCost="0.0" exclusive="false" initialCostPerUnit="0.0">
          <parameterValueList list-id="list1" label="list 1">
            <parameterValue value-id="allBacteria" default="false" cost="5000.0" delay="21" lateDelay="0" lateDate="0">
<display>all bacteria</display>            </parameterValue>
            <parameterValue value-id="denitrifiers" default="false" cost="5000.0" delay="21" lateDelay="0" lateDate="0">
<display>denitrifiers</display>            </parameterValue>
            <parameterValue value-id="methanogens" default="false" cost="5000.0" delay="21" lateDelay="0" lateDate="0">
<display>methanogens</display>            </parameterValue>
            <parameterValue value-id="methanotrophs" default="false" cost="5000.0" delay="21" lateDelay="0" lateDate="0">
<display>methanotrophs</display>            </parameterValue>
            <parameterValue value-id="nitrifiers" default="false" cost="5000.0" delay="21" lateDelay="0" lateDate="0">
<display>nitrifiers</display>            </parameterValue>
            <parameterValue value-id="FeOxidizers" default="false" cost="5000.0" delay="21" lateDelay="0" lateDate="0">
<display>Fe oxidizers</display>            </parameterValue>
            <parameterValue value-id="sulfurOxidizers" default="false" cost="5000.0" delay="21" lateDelay="0" lateDate="0">
<display>sulfur oxidizers</display>            </parameterValue>
            <parameterValue value-id="sulfateReducers" default="false" cost="5000.0" delay="21" lateDelay="0" lateDate="0">
<display>sulfate reducers</display>            </parameterValue>
          </parameterValueList>
        </parameter>
      </parameters>
    </test>
    <test id="fish" label="FISH" cost="0.0" delay="0" isInt="true" description="fish.html">
      <keywords>
        <keyword value="phylogenetic analysis"/>
        <keyword value="phylogeny"/>
        <keyword value="community structure"/>
        <keyword value="community analysis"/>
        <keyword value="species composition"/>
        <keyword value="T-RFLP"/>
        <keyword value="16s rRNA"/>
        <keyword value="16sRNA"/>
        <keyword value="probe"/>
        <keyword value="FISH"/>
      </keywords>
      <parameters>
        <parameter parameter-id="location" label="Location of Sample" cost="0.0" delay="0" fixedCost="0.0" selection="multiple" mainCost="0.0" exclusive="true" initialCostPerUnit="0.0">
          <parameterValueList list-id="list1" label="list 1">
            <parameterValue value-id="checkpoint1" default="false" cost="0.0" delay="0" lateDelay="0" lateDate="0">
<display>check point 1</display>            </parameterValue>
            <parameterValue value-id="checkpoint2" default="false" cost="0.0" delay="0" lateDelay="0" lateDate="0">
<display>check point 2</display>            </parameterValue>
            <parameterValue value-id="checkpoint3" default="false" cost="0.0" delay="0" lateDelay="0" lateDate="0">
<display>check point 3</display>            </parameterValue>
            <parameterValue value-id="checkpoint4" default="false" cost="0.0" delay="0" lateDelay="0" lateDate="0">
<display>check point 4</display>            </parameterValue>
            <parameterValue value-id="checkpoint5" default="false" cost="0.0" delay="0" lateDelay="0" lateDate="0">
<display>check point 5</display>            </parameterValue>
            <parameterValue value-id="checkpoint6" default="false" cost="0.0" delay="0" lateDelay="0" lateDate="0">
<display>check point 6</display>            </parameterValue>
            <parameterValue value-id="checkpoint7" default="false" cost="0.0" delay="0" lateDelay="0" lateDate="0">
<display>check point 7</display>            </parameterValue>
            <parameterValue value-id="checkpoint8" default="false" cost="0.0" delay="0" lateDelay="0" lateDate="0">
<display>check point 8</display>            </parameterValue>
            <parameterValue value-id="checkpoint9" default="false" cost="0.0" delay="0" lateDelay="0" lateDate="0">
<display>check point 9</display>            </parameterValue>
            <parameterValue value-id="checkpoint10" default="false" cost="0.0" delay="0" lateDelay="0" lateDate="0">
<display>check point 10</display>            </parameterValue>
            <parameterValue value-id="checkpoint11" default="false" cost="0.0" delay="0" lateDelay="0" lateDate="0">
<display>check point 11</display>            </parameterValue>
            <parameterValue value-id="checkpoint12" default="false" cost="0.0" delay="0" lateDelay="0" lateDate="0">
<display>check point 12</display>            </parameterValue>
          </parameterValueList>
        </parameter>
        <parameter parameter-id="primerSet" label="Primer Set" cost="10000.0" delay="0" fixedCost="0.0" selection="multiple" mainCost="0.0" exclusive="false" initialCostPerUnit="0.0">
          <parameterValueList list-id="list1" label="list 1">
            <parameterValue value-id="allBacteria" default="false" cost="10000.0" delay="35" lateDelay="0" lateDate="0">
<display>all bacteria</display>            </parameterValue>
            <parameterValue value-id="methanogens" default="false" cost="10000.0" delay="35" lateDelay="0" lateDate="0">
<display>methanogens</display>            </parameterValue>
            <parameterValue value-id="nitrifiers" default="false" cost="10000.0" delay="35" lateDelay="0" lateDate="0">
<display>nitrifiers</display>            </parameterValue>
            <parameterValue value-id="FeOxidizers" default="false" cost="10000.0" delay="35" lateDelay="0" lateDate="0">
<display>Fe oxidizers</display>            </parameterValue>
            <parameterValue value-id="sulfateReducers" default="false" cost="10000.0" delay="35" lateDelay="0" lateDate="0">
<display>sulfate reducers</display>            </parameterValue>
          </parameterValueList>
        </parameter>
      </parameters>
    </test>
    <test id="hydrology" label="Hydrology" cost="0.0" delay="0" isInt="false" description="hydrology.html">
      <keywords>
        <keyword value="Fluid"/>
        <keyword value="fluid dynamics"/>
        <keyword value="water flow"/>
        <keyword value="hydrodynamics"/>
        <keyword value="hydrology"/>
      </keywords>
      <parameters>
        <parameter parameter-id="location" label="Location of Sample" cost="0.0" delay="0" fixedCost="0.0" selection="multiple" mainCost="2000.0" exclusive="false" initialCostPerUnit="500.0">
          <parameterValueList list-id="list1" label="list 1">
            <parameterValue value-id="checkpoint1" default="false" cost="0.0" delay="1" lateDelay="7" lateDate="15">
<display>check point 1</display>            </parameterValue>
            <parameterValue value-id="checkpoint2" default="false" cost="0.0" delay="1" lateDelay="0" lateDate="0">
<display>check point 2</display>            </parameterValue>
            <parameterValue value-id="checkpoint3" default="false" cost="0.0" delay="1" lateDelay="0" lateDate="0">
<display>check point 3</display>            </parameterValue>
            <parameterValue value-id="checkpoint4" default="false" cost="0.0" delay="1" lateDelay="0" lateDate="0">
<display>check point 4</display>            </parameterValue>
            <parameterValue value-id="checkpoint5" default="false" cost="0.0" delay="1" lateDelay="0" lateDate="0">
<display>check point 5</display>            </parameterValue>
            <parameterValue value-id="checkpoint6" default="false" cost="0.0" delay="1" lateDelay="0" lateDate="0">
<display>check point 6</display>            </parameterValue>
            <parameterValue value-id="checkpoint7" default="false" cost="0.0" delay="1" lateDelay="0" lateDate="0">
<display>check point 7</display>            </parameterValue>
            <parameterValue value-id="checkpoint8" default="false" cost="0.0" delay="1" lateDelay="0" lateDate="0">
<display>check point 8</display>            </parameterValue>
            <parameterValue value-id="checkpoint9" default="false" cost="0.0" delay="1" lateDelay="7" lateDate="15">
<display>check point 9</display>            </parameterValue>
            <parameterValue value-id="checkpoint10" default="false" cost="0.0" delay="1" lateDelay="7" lateDate="15">
<display>check point 10</display>            </parameterValue>
            <parameterValue value-id="checkpoint11" default="false" cost="0.0" delay="1" lateDelay="7" lateDate="15">
<display>check point 11</display>            </parameterValue>
            <parameterValue value-id="checkpoint12" default="false" cost="0.0" delay="1" lateDelay="7" lateDate="15">
<display>check point 12</display>            </parameterValue>
          </parameterValueList>
        </parameter>
      </parameters>
    </test>
    <test id="waterChemistry" label="Water Chemistry" cost="0.0" delay="3" isInt="false" description="waterChemistry.html">
      <keywords>
        <keyword value="water chemistry"/>
        <keyword value="chemistry"/>
        <keyword value="chemical analysis"/>
        <keyword value="oxygen"/>
        <keyword value="nitrate"/>
        <keyword value="sulfate"/>
        <keyword value="carbon"/>
        <keyword value="phosphorus"/>
        <keyword value="phosphor"/>
        <keyword value="ph"/>
        <keyword value="water quality"/>
        <keyword value="sulfur"/>
        <keyword value="temperature"/>
        <keyword value="do"/>
        <keyword value="Dissolved Oxygen"/>
        <keyword value="s"/>
      </keywords>
      <parameters>
        <parameter parameter-id="location" label="Location of Sample" cost="0.0" delay="3" fixedCost="0.0" selection="multiple" mainCost="0.0" exclusive="true" initialCostPerUnit="0.0">
          <parameterValueList list-id="list1" label="list 1">
            <parameterValue value-id="checkpoint1" default="false" cost="0.0" delay="3" lateDelay="0" lateDate="0">
<display>check point 1</display>            </parameterValue>
            <parameterValue value-id="checkpoint2" default="false" cost="100.0" delay="3" lateDelay="0" lateDate="0">
<display>check point 2</display>            </parameterValue>
            <parameterValue value-id="checkpoint3" default="false" cost="100.0" delay="3" lateDelay="0" lateDate="0">
<display>check point 3</display>            </parameterValue>
            <parameterValue value-id="checkpoint4" default="false" cost="100.0" delay="3" lateDelay="0" lateDate="0">
<display>check point 4</display>            </parameterValue>
            <parameterValue value-id="checkpoint5" default="false" cost="100.0" delay="3" lateDelay="0" lateDate="0">
<display>check point 5</display>            </parameterValue>
            <parameterValue value-id="checkpoint6" default="false" cost="100.0" delay="3" lateDelay="0" lateDate="0">
<display>check point 6</display>            </parameterValue>
            <parameterValue value-id="checkpoint7" default="false" cost="100.0" delay="3" lateDelay="0" lateDate="0">
<display>check point 7</display>            </parameterValue>
            <parameterValue value-id="checkpoint8" default="false" cost="100.0" delay="3" lateDelay="0" lateDate="0">
<display>check point 8</display>            </parameterValue>
            <parameterValue value-id="checkpoint9" default="false" cost="0.0" delay="3" lateDelay="0" lateDate="0">
<display>check point 9</display>            </parameterValue>
            <parameterValue value-id="checkpoint10" default="false" cost="0.0" delay="3" lateDelay="0" lateDate="0">
<display>check point 10</display>            </parameterValue>
            <parameterValue value-id="checkpoint11" default="false" cost="0.0" delay="3" lateDelay="0" lateDate="0">
<display>check point 11</display>            </parameterValue>
            <parameterValue value-id="checkpoint12" default="false" cost="0.0" delay="3" lateDelay="0" lateDate="0">
<display>check point 12</display>            </parameterValue>
          </parameterValueList>
        </parameter>
        <parameter parameter-id="variable" label="Test variable" cost="50.0" delay="3" fixedCost="0.0" selection="multiple" mainCost="0.0" exclusive="false" initialCostPerUnit="0.0">
          <parameterValueList list-id="list1" label="list 1">
            <parameterValue value-id="pH" default="false" cost="50.0" delay="3" lateDelay="0" lateDate="0">
<display>pH</display>            </parameterValue>
            <parameterValue value-id="do" default="false" cost="50.0" delay="3" lateDelay="0" lateDate="0">
<display>dissolved oxygen</display>            </parameterValue>
            <parameterValue value-id="PO4" default="false" cost="50.0" delay="3" lateDelay="0" lateDate="0">
<display>PO4</display>            </parameterValue>
            <parameterValue value-id="Cl-" default="false" cost="50.0" delay="3" lateDelay="0" lateDate="0">
<display>Cl-</display>            </parameterValue>
            <parameterValue value-id="H2S" default="false" cost="50.0" delay="3" lateDelay="0" lateDate="0">
<display>H2S</display>            </parameterValue>
            <parameterValue value-id="SO4" default="false" cost="50.0" delay="3" lateDelay="0" lateDate="0">
<display>SO4</display>            </parameterValue>
            <parameterValue value-id="NO3" default="false" cost="50.0" delay="3" lateDelay="0" lateDate="0">
<display>NO3</display>            </parameterValue>
            <parameterValue value-id="NO2" default="false" cost="50.0" delay="3" lateDelay="0" lateDate="0">
<display>NO2</display>            </parameterValue>
            <parameterValue value-id="NH4" default="false" cost="50.0" delay="3" lateDelay="0" lateDate="0">
<display>NH4</display>            </parameterValue>
          </parameterValueList>
        </parameter>
      </parameters>
    </test>
  </tests>
</domain>
